Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs4573554 chr1:56398037 C/T 0.000165 178 25.53 26.27 15.8 KM Plot
PCPG rs458197 chr3:161092764 G/A 0.000254 172 25.47 23.43 3.17 KM Plot
PCPG rs4585710 chr8:11303828 C/T 7.79E-6 178 25.67 19.57 14.15 KM Plot
PCPG rs4597327 chr16:90054955 A/G 1.11E-8 172 25.87 20.2 6.62 KM Plot
PCPG rs4597510 chr2:61583927 T/C 6.43E-5 178 23.43 29.88 10.3 KM Plot
PCPG rs4605214 chr17:50282834 C/T 6.07E-5 178 25.77 27.6 14.47 KM Plot
PCPG rs4619132 chr11:18152386 T/C 4.63E-6 175 26.43 23.48 10.3 KM Plot
PCPG rs4624036 chr13:37521738 T/C 0.000345 174 4.17 19.1 26.57 KM Plot
PCPG rs4632682 chr4:78951867 A/G 0 176 2.93 25.87 25.28 KM Plot
PCPG rs4675917 chr2:242557785 C/T 4.36E-5 178 19.75 29.57 25.87 KM Plot
PCPG rs4675924 chr2:242538496 A/G 3.49E-5 175 25.87 29.57 20.2 KM Plot
PCPG rs4675925 chr2:242522140 A/G 4.96E-5 176 25.87 27.62 19.75 KM Plot
PCPG rs4675927 chr2:242516487 C/G 4.6E-5 177 25.87 29.57 19.75 KM Plot
PCPG rs4686766 chr3:184524522 C/T 1.02E-5 178 24.7 25.77 25.17 KM Plot
PCPG rs4713007 chr6:26537609 A/G 6.12E-7 178 10.68 32.6 24.53 KM Plot